Makefile redo & other features (#395)

* .build containment implemented

* no destructive variable setting - builds in either folder

* make from 3 places

* cleans before each build
* make from root with keyboard=keyboard, keymap=keymap
* make from keyboard/keyboard with keymap=keymap
* make from keymaps/keymap
* only implemented on planck

* adds color diag to avr-gcc

* makefiles for all plancks, clean-up

* quick build-all makefile for plancks

* reformatting of make output (colors)

* color toggle, tmk path corrections

* correct if statement for color

* move config.h to main makefile, updates preonic, atomic

* format update, all keyboards targets

* makefile optional for build all target, alps and arrow_pad updated

* alps updated

* make planck default, trying out travis recipe for all-keyboards

* all-keymaps target, different travis recipe

* updates alps64

* updates keyboards to new format

* updates clue* projects

* all projects updated, specialise EZ .hex, let .hex through

* updates travis

* automatically find root, keyboard, keymap

* silent echo, cleaned-up mass make output

* updates all keyboards' .hex files except EZ

* Rename Bantam44.c to bantam44.c

* Rename Bantam44.h to bantam44.h

* nananana

* adds six key keyboard

* does same to ez as rest

* updates send_string example

* brings ergodox_ez up to date

* updates template/new project script

* adds sixkeyboard

* adds readme for sixkeyboard

* adds sixkeyboard to travis

* filenames, gitignore mess

* define clock prescaler stuff manually

* make quick, size test example

* documentation and dfu-no-build

4 files changed, 4 insertions, 107 deletions

diff --git a/quantum/quantum.mk b/quantum/quantum.mk
deleted file mode 100644
index 00d3e8114..000000000
--- a/quantum/quantum.mk
+++ /dev/null
@@ -1,58 +0,0 @@
-QUANTUM_DIR = quantum
-
-ifndef VERBOSE
-.SILENT:
-endif
-
-# # project specific files
-SRC += $(QUANTUM_DIR)/quantum.c \
-	$(QUANTUM_DIR)/keymap_common.c \
-	$(QUANTUM_DIR)/led.c
-
-# ifdef KEYMAP_FILE
-# ifneq (,$(shell grep USING_MIDI '$(KEYMAP_FILE)'))
-# MIDI_ENABLE=yes
-# $(info  * Overriding MIDI_ENABLE setting - $(KEYMAP_FILE) requires it)
-# endif
-# ifneq (,$(shell grep USING_UNICODE '$(KEYMAP_FILE)'))
-# UNICODE_ENABLE=yes
-# $(info  * Overriding UNICODE_ENABLE setting - $(KEYMAP_FILE) requires it)
-# endif
-# ifneq (,$(shell grep USING_BACKLIGHT '$(KEYMAP_FILE)'))
-# BACKLIGHT_ENABLE=yes
-# $(info  * Overriding BACKLIGHT_ENABLE setting - $(KEYMAP_FILE) requires it)
-# endif
-# endif
-
-ifndef CUSTOM_MATRIX
-	SRC += $(QUANTUM_DIR)/matrix.c
-endif
-
-#ifeq ($(strip $(MIDI_ENABLE)), yes)
-#	SRC += $(QUANTUM_DIR)/keymap_midi.c
-#endif
-
-ifeq ($(strip $(AUDIO_ENABLE)), yes)
-    SRC += $(QUANTUM_DIR)/audio/audio.c
-    SRC += $(QUANTUM_DIR)/audio/voices.c
-    SRC += $(QUANTUM_DIR)/audio/luts.c
-endif
-
-ifeq ($(strip $(RGBLIGHT_ENABLE)), yes)
-	SRC += $(QUANTUM_DIR)/light_ws2812.c
-	SRC += $(QUANTUM_DIR)/rgblight.c
-	OPT_DEFS += -DRGBLIGHT_ENABLE
-endif
-
-# Optimize size but this may cause error "relocation truncated to fit"
-#EXTRALDFLAGS = -Wl,--relax
-
-# Search Path
-VPATH += $(TOP_DIR)/$(QUANTUM_DIR)
-VPATH += $(TOP_DIR)/$(QUANTUM_DIR)/keymap_extras
-VPATH += $(TOP_DIR)/$(QUANTUM_DIR)/audio
-
-include $(TMK_DIR)/protocol/lufa.mk
-
-include $(TMK_DIR)/common.mk
-include $(TMK_DIR)/rules.mk
diff --git a/quantum/template/Makefile b/quantum/template/Makefile
index f101eb7a6..8772b0920 100644
--- a/quantum/template/Makefile
+++ b/quantum/template/Makefile
@@ -38,28 +38,6 @@
 # To rebuild project do "make clean" then "make all".
 #----------------------------------------------------------------------------
 
-# Target file name (without extension).
-TARGET = %KEYBOARD%
-
-
-# Directory common source filess exist
-TOP_DIR = ../..
-TMK_DIR = ../../tmk_core
-
-# Directory keyboard dependent files exist
-TARGET_DIR = .
-
-# # project specific files
-SRC = %KEYBOARD%.c
-
-ifdef KEYMAP
-    SRC := keymaps/$(KEYMAP).c $(SRC)
-else
-    SRC := keymaps/default.c $(SRC)
-endif
-
-CONFIG_H = config.h
-
 # MCU name
 #MCU = at90usb1287
 MCU = atmega32u4
@@ -113,12 +91,11 @@ OPT_DEFS += -DBOOTLOADER_SIZE=512
 # Build Options
 #   change yes to no to disable
 #
-BOOTMAGIC_ENABLE = yes      # Virtual DIP switch configuration(+1000)
+BOOTMAGIC_ENABLE = no      # Virtual DIP switch configuration(+1000)
 MOUSEKEY_ENABLE = yes       # Mouse keys(+4700)
 EXTRAKEY_ENABLE = yes       # Audio control and System control(+450)
 CONSOLE_ENABLE = yes        # Console for debug(+400)
 COMMAND_ENABLE = yes        # Commands for debug and configuration
-KEYBOARD_LOCK_ENABLE = yes  # Allow locking of keyboard via magic key
 # Do not enable SLEEP_LED_ENABLE. it uses the same timer as BACKLIGHT_ENABLE
 SLEEP_LED_ENABLE = no       # Breathing sleep LED during USB suspend
 # if this doesn't work, see here: https://github.com/tmk/tmk_keyboard/wiki/FAQ#nkro-doesnt-work
@@ -129,30 +106,8 @@ UNICODE_ENABLE = no         # Unicode
 BLUETOOTH_ENABLE = no       # Enable Bluetooth with the Adafruit EZ-Key HID
 AUDIO_ENABLE = no           # Audio output on port C6
 
-
-ifdef KEYMAP
-
-ifeq ("$(wildcard keymaps/$(KEYMAP).c)","")
-ifneq ("$(wildcard keymaps/$(KEYMAP)/makefile.mk)","")
-    include keymaps/$(KEYMAP)/makefile.mk
-endif 
-endif
-
-else
-
-ifneq ("$(wildcard keymaps/default/makefile.mk)","")
-    include keymaps/default/makefile.mk
+ifndef QUANTUM_DIR
+	include ../../Makefile
 endif
 
-endif
-
-# Optimize size but this may cause error "relocation truncated to fit"
-#EXTRALDFLAGS = -Wl,--relax
-
-# Search Path
-VPATH += $(TARGET_DIR)
-VPATH += $(TOP_DIR)
-VPATH += $(TMK_DIR)
-
-include $(TOP_DIR)/quantum/quantum.mk
 
diff --git a/quantum/template/README.md b/quantum/template/README.md
index 39f9f59d1..baaeef473 100644
--- a/quantum/template/README.md
+++ b/quantum/template/README.md
@@ -3,7 +3,7 @@
 
 ## Quantum MK Firmware
 
-For the full Quantum feature list, see [the parent README.md](/README.md).
+For the full Quantum feature list, see [the parent README.md](/doc/README.md).
 
 ## Building
 
diff --git a/quantum/template/keymaps/default.c b/quantum/template/keymaps/default/keymap.c
index 4121fd860..4121fd860 100644
--- a/quantum/template/keymaps/default.c
+++ b/quantum/template/keymaps/default/keymap.c